6.1. Set operations
- 6.1.1. bedops
- 6.1.1.1. Inputs and outputs
- 6.1.1.2. Usage
- 6.1.1.3. Operations
- 6.1.1.3.1. Everything (-u, –everything)
- 6.1.1.3.2. Element-of (-e, –element-of)
- 6.1.1.3.3. Not-element-of (-n, –not-element-of)
- 6.1.1.3.4. Complement (-c, –complement)
- 6.1.1.3.5. Difference (-d, –difference)
- 6.1.1.3.6. Symmetric difference (-s, –symmdiff)
- 6.1.1.3.7. Intersect (-i, –intersect)
- 6.1.1.3.8. Merge (-m, –merge)
- 6.1.1.3.9. Partition (-p, –partition)
- 6.1.1.3.10. Chop (-w, –chop)
- 6.1.1.3.11. Stagger (–stagger)
- 6.1.1.3.12. Exclude (-x)
- 6.1.1.3.13. Per-chromosome operations (–chrom)
- 6.1.1.3.14. Range (–range)
- 6.1.1.4. Starch support
- 6.1.1.5. Error checking (–ec)
- 6.1.1.6. Tips
- 6.1.2. bedextract
- 6.1.3. closest-features
- 6.1.4. Nested elements